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Confocal and Airyscan Fast

A confocal microscope is a high-performance fluorescence microscope that uses scanning optics to see only one very thin focal plane within the sample. Everything above and below this optical section is hidden, to give better resolution and a prettier picture. Thick samples can be imaged without physical cutting, and there are a myriad of vital stains available for labeling features of living samples. Model organisms can add their own fluorescent protein tags to a gene product, for precise labeling of specific cell components.

Spectral Confocal Technology
Confocal can use several lasers and vary the detector ranges

The two confocal technologies available in the core are spectral point scanning confocal (Leica or Zeiss) and Zeiss Airyscan Fast. Confocal scans a point of laser light  into the sample, then returning signal is filtered through the confocal pinhole.  The colors are spread across a set of detectors, which each take a chosen piece of the spectrum.  This gives great flexibility, as any range of colors can be collected simultaneously.  If multiple lasers are used, they can blink on and off rapidly, to prevent crosstalk between dyes and give cleaner colors.  Spectral Unmixing can separate very similar dyes, or even remove autofluorescence to reveal dim underlying signal; such as in this whitefly head, coded blue, to reveal Alexa-647 labeled mosaic-virus inside the pharynx, where it waits to infect the next plant.

Blue Autofluorescence Channel Reveals Red Virus in Foregut
Spectral Unmix separation of Whitefly autofluorescence (Blue) to reveal red labeled virus in pharynx
Airyscan Fast

With Airyscan Fast, the laser light is stretched into a small line, which can sweep the sampled area many times faster.  Returning light hits an array of pinholes, and the signal from each is compared to calculate a 50% sharper, noise-free image.  The round laser can also be used with the Airyscan detector for a 70% sharpness improvement, but without the great increase in speed, or reduction in laser damage.

Our Keyence and Zeiss Inverted systems have an optional incubator stage inserts for long term experiments on mammalian cells, which can be kept at 37oC and 5% CO2 for extended time experiments.



The detection limit of fluorescence technologies is set by background emission, which obscures very dim signals.  But when Luciferase is exposed to its Luciferin substrate, it emits light in complete darkness.  Our custom Luminescence Dark Box is an utterly dark enclosure, with a very sensitive cooled camera and bright lens.  It can stare for up to 5 minutes, to locate extremely low copy number Luciferase expression on a macro scale.  A mouse management manifold can keep pairs of mice comfortable for animal work. LED light engines have been added to allow quick fluorescence imaging in the same enclosure, using screw-on filters over the camera lens.  A remote control piston has also been added, for example to tip a multiwell plate to mix in a reagent.

Luciferase Arabidopsis Assay
5min seedling detection; LED light engine and mouse manifold on Dark Box


Scanning Electron Microscopy

Traditional SEM requires samples to be fixed, dried, and then gold coated, for imaging in a large electron column.  Our new environmental SEM requires no preparation and can make publication quality images of fresh samples in a matter of minutes.  It has optional voltage control, current control and vacuum control for greater versatility.  At 5kV it can de-magnify to 10x; and at 20kV, the  electrons have so much energy, they can make mineral samples glow (Cathode Luminescence) and reveal their age related growth rings.  When the sample is loaded, an optical map is made of the whole stub, and very high pixel count images can be stitched together by drawing rectangles of interest on this color map.

Versatile Environmental SEM
Very compact and easy to use environmental SEM
Cathode Luminescence shows fine growth rings in Zircon crystal
CL shows growth rings in Zircons, so geologists can aim an ablation laser for isotope-dating.













Macro Microscopy

Enlarger Stand Upgraded with dSLR Camera
Nikon Multiphot is Ideal for Inch-sized Samples

A conventional stereoscope with fluorescence and a 24 Megapixel color camera is available for routine imaging of larger samples.  An updated Nikon Multiphot enlarger stand can be set to take sharp images of inch-scale samples.  Both have computer controlled cameras for easier preview and adjustment of exposure time, bracketing, and ISO sensitivity.  A pantograph hand micro manipulator can steady and gear-down hand movements for fine dissection work under the stereoscope.  

For viewing cryosections by eye, a Nightsea-equipped stereo microscope is available at no charge.  This uses LED light engines on a gooseneck arm, and magnetic clip-on filters to block the excitation light from the objective lens.


Physical Sectioning

Sometimes a large sample needs to be cut carefully to expose an interior volume of interest. This can be done quickly on a cryostat.  The sample is frozen in OCT mountant, then driven across a Tungsten Carbide blade, to cut sections up to 300µm thick.  Alternatively, fresh tissue can be mounted in a water bath and sawn through with a vibrating razor or sapphire blade, on an oscillating tissue slicer. 

An ultramicrotome is available for TEM sample preparation, for users already skilled in this work.  Otherwise please consult the Central Facility for Advanced Microscopy and Microanalysis (CFAMM) in Bourns Hall, where the big electron microscopes are housed.

A high quality cryostat for cutting thin sections is housed within the School of Medicine Histology Core in Webber Hall.

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